PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G280800.1
Common NameB456_007G280800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 215aa    MW: 24413.1 Da    PI: 4.7059
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G280800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1995144355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr ++ +g+++AeIrd + ng   r++lg+f+t+e Aa a+++a+++++g
  Gorai.007G280800.1  95 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTEESAALAYDQAALAMRG 144
                         9*******.**********44465..*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3094153IPR001471AP2/ERF domain
SMARTSM003802.6E-3694158IPR001471AP2/ERF domain
PROSITE profilePS5103223.19694152IPR001471AP2/ERF domain
PfamPF008476.4E-1495144IPR001471AP2/ERF domain
PRINTSPR003672.1E-1095106IPR001471AP2/ERF domain
CDDcd000184.57E-2995152No hitNo description
SuperFamilySSF541711.18E-2295153IPR016177DNA-binding domain
PRINTSPR003672.1E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDSSFFQYPN LHFSSESSSS QISQENFSPH SSFSYARNQA LPFNENDSQE MLLLGVLNQA  60
PEAHSFDTTS LTSFRDDHEV NSKPVEEETG KEISYRGVRK RPWGKYAAEI RDSTRNGVRV  120
WLGTFDTEES AALAYDQAAL AMRGPMAILN FPMDKVYESL QEMNYGFEEG CSPVLTMKKR  180
SGKKKMMKKD EKENRLVLED LGADYLEEPA TPYW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2695153361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488287.11e-128PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC82e-56ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A0D2TMW21e-161A0A0D2TMW2_G
STRINGPOPTR_0013s04240.12e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22752876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.12e-44ethylene response factor 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]